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Index of /EvidentialGene/killifish/Repeats

      Name                                    Last modified       Size  

[DIR] Parent Directory 10-Jan-2014 14:45 - [TXT] killifish20130322asm.repmask.txt 04-Dec-2014 22:06 2k [   ] repeat_rrna.gff.gz 27-Jun-2013 15:26 6k [   ] repeats.gff.gz 27-Jun-2013 15:25 6.2M [TXT] repmask_asm2a_info.txt 30-Jan-2013 20:25 1k [TXT] repmask_asm2b_info.txt 09-Jan-2014 08:17 1k [   ] transposon.gff.gz 27-Jun-2013 15:25 11.6M [   ] transposon_repeats_crjackson2015.gff.gz 04-May-2015 13:52 45.5M


Transposons and repeats from Repeatmasker summary for killifish
assembly version:  killifish20130322asm.fa  

total length: 1021884213 bp  (932483305 bp excl N/X-runs)
bases masked:  119737409 bp ( 11.72 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
Retroelements       180282     46398100 bp    4.54 %
   SINEs:            40699      5993553 bp    0.59 %
   Penelope          10257      1681496 bp    0.16 %
   LINEs:           126926     34587314 bp    3.38 %
     L2/CR1/Rex      80762     21210590 bp    2.08 %
   LTR elements:     12657      5817233 bp    0.57 %
DNA transposons     266325     57294905 bp    5.61 %
   Tc1-IS630-Pogo   198290     49779162 bp    4.87 %
Total interspersed repeats:   104110292 bp   10.19 %
Small RNA:            2034       209566 bp    0.02 %
Simple repeats:     175928      8734306 bp    0.85 %
Low complexity:     166078      6744235 bp    0.66 %
==================================================


Developed at the Genome Informatics Lab of Indiana University Biology Department