Indiana University

/ Services


Genome Informatics Lab




Software publications by Don Gilbert 2002. BioGridRunner, a preliminary bioinformatics client application for data grid computing. grid/runner

1995 - 1998. SeqPup, biosequence editor & analysis software for for molecular
biology, available for common operating systems. Freely available, open source in C++ and Java. soft/molbio/seqpup/

1997 - 1999. Phylodendron, software for phylogenetic tree drawing in Java. soft/molbio/java/apps/trees/ and

1996. loopDloop in Java, for drawing RNA secondary structure. soft/molbio/java/apps/loops/

1996. Bopper, a new Internet biocomputing office protocol for client-server
data analysis. This employs CORBA client-server protocols and works with the SeqPup
sequence analsysis package. util/dclap/source/bopper.tar.gz

1996. Portable FlyBase server available for Drosophila data. docs/Portable-server/

1996. Fruit flies in your Java: a Java mapplet for Drosophila genome map
browsing. Bionet.Software, Feb 1996. . See also maps/java/

1995. SRS-FastA: Similarity searches of Genbank subsets.

1995. Genbank searches at IUBio archive Genbank-Sequences/

1995. New Sequence Retrieval Service (SRS) node at IUBio, Indiana

1994. DCLAP, a C++ class application library package for bioscience applications (cross-platform) util/dclap/

1992. Booleans, partial words and other WAIS modifications in biology data searches. util/wais/

1992 IUBio Archive through Internet Gopher. Feb. 1992. .

1992. SeqApp, a biological sequence editor and analysis program for Macintosh computers. molbio/seqapp/

1992. GopherApp, an Internet Gopher client for Macintosh computers. util/gopher/gopherapp/

1992. loopDloop, a Macintosh application for drawing and editing RNA secondary
structure displays. August 1992. molbio/loopdloop/

1990. GenBank Search, a Hypercard stack for network searching and fetching sequences from the GenBank e-mail server. October 1990. molbio/mac/gbsearch-ncbi.hqx

1990. MulFold, a Macintosh application, port of Michael Zuker's MFOLD for estimating RNA secondary structure. October 1990. molbio/mac/mulfold.hqx

1990. TreeDraw Deck, a Hypercard implementation of Joseph Felsenstein's phylogenetic tree drawing routines. June 1990. /molbio/mac/treedraw-old.hqx

1989. ReadSeq, C and Pascal routines for converting among nucleic acid & protein sequence file formats, suitable for various computers. /molbio/readseq/

1989. GelFragSizer, a Macintosh Hypercard stack for calculating and plotting restriction fragment sizes for molecular biology. molbio/mac/gelfragsizer.hqx

1989. Enzyme Kinetix, a Macintosh Hypercard stack for calculating and plotting enzyme kinetics for biochemistry. molbio/mac/enzymekinetics.hqx

1989. Dotty Plotter, a Macintosh application for dot plot sequence comparisons. molbio/mac/dottyplot.hqx

1989. HyperGCG, an unfinished Hypercard front-end for using molecular biology software, especially GCG, on VMS Vaxes. molbio/mac/hypergcg.hqx