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Arthropod gene ortholog analysis

OrthoMCL clustering of proteins among arthropod genomes

Daphnia Ortholog Groups Search, DAPHNIA17 water flea genes, 2017
Fish Ortholog Groups Search, FISH12 of Killifish genome project, 2014
Arthropod Ortholog Groups Search, EvidentialGene ARP7, 2014

Search Arthropod gene clusters
ARP1: (2008.08)   ...   ARP2: (2009.12)

for:  

>Limit to genes in these taxa
Mosquitoes
Fruitflies
Hymenoptera
Other insects
Other Ar'pods
>Limit to genes in these species
See this Summary of Arthropod ortholog clusters
Phylogenetic trees: Fitch:phenogram or Neighor:tree
Arthropod genomes phylogenetic tree

>Newick tree of Arthropods
      Name                     Last modified       Size  Description

[DIR] Parent Directory 11-Dec-2017 14:02 - [   ] arthropod-arp2-pheno.pdf 04-Jan-2010 17:01 2k [   ] arthropod-arp2-tree.pdf 04-Jan-2010 17:02 1k [IMG] arthropod-arp2-tree.png 04-Jan-2010 17:06 84k [IMG] arthropod-arp2-pheno.png 04-Jan-2010 17:07 44k [DIR] ARP2/ 24-Jul-2011 23:06 - [DIR] ARP1/ 24-Jul-2011 23:13 - [DIR] genetrees/ 26-Jul-2011 22:21 - [DIR] ARP3x/ 25-Feb-2012 13:12 - [DIR] ARP7/ 24-Nov-2014 18:16 - [DIR] DAPHNIA17/ 11-Dec-2017 14:04 - [DIR] FISH12/ 11-Dec-2017 14:05 -

Citations:
  D. Gilbert, OrthoMCL clustering among 14 arthropod proteomes (ARP2).
  http://arthropods.eugenes.org/arthropods/
  Dec. 2009, gilbertd@indiana.edu

  D. Gilbert, OrthoMCL clustering among 13 arthropod proteomes (ARP1).
  http://insects.eugenes.org/arthropods/
  Aug. 2008, gilbertd@indiana.edu

  OrthoMCL: http://www.orthomcl.org/
   Li Li, Christian J. Stoeckert, Jr., and David S. Roos
   OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes. Genome Res. 2003 13: 2178-2189.
   Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, and David S. Roos
   Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes. PLoS ONE 2007 2(
4): e383.


Developed at the Genome Informatics Lab of Indiana University Biology Department