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EvidentialGene gene assembly for Zea mays corn plant

assembled from the published RNA-seq of doi:10.1038/srep04519, 2014, from maize seedling, 250 M Illumina pairs.
      Name                              Last modified       Size  

[DIR] Parent Directory 26-Jan-2017 21:02 - [   ] evg4corn160901.aa.gz 30-Aug-2016 16:03 64.7M [TXT] evg4corn160901.aa.qual 31-Aug-2016 14:09 27.3M [   ] evg4corn160901.ann.txt.gz 01-Sep-2016 15:38 13.6M [   ] evg4corn160901.cds.gz 30-Aug-2016 16:04 101M [TXT] evg4corn160901.consv_ohnologs.tab 31-Aug-2016 22:58 443k [   ] evg4corn160901.gff3.gz 30-Aug-2016 16:42 53.3M [TXT] evg4corn160901.maploc.txt 31-Aug-2016 22:55 19.4M [TXT] evg4corn160901.mediatorp2.tab 31-Aug-2016 17:08 3k [   ] evg4corn160901.mrna.gz 30-Aug-2016 16:05 138M [DIR] evg4corn_info/ 01-Sep-2016 16:56 - [DIR] examples/ 02-Sep-2016 18:49 -


Data contents:
Gene sequnces, with suffix 
  aa = protein, cds = coding seq, mrna = transcript seq, 
  aa.qual = table of protein IDs, sizes

Gene annotation table, ann.txt, with columns
Public_mRNA_ID Object_IDs      Class   AAqual  
   AAref   
   Chromosome_map  
   TrLen   CDSoff  Dbxref  Namealign       Product_Name
...
Zeamay4eEVm000001t1     Zeamay4EVm000001t1,tidbcornhi12mer3ridk47Loc24550       main    5425,97%,complete       
  aaref:10109,Sobic.009G173600.1.p,refbest,igloc:Ig000001 
  chrmap:98a,16278l,59x,NC_024464.1:154250572-154293534:+ 
  16729   35-16312        Sobic.009G173600.1.p,   100     ATPases
Zeamay4eEVm000002t1     Zeamay4EVm000002t2,tidbcornhi12mer3ridk77Loc1   main    5066,96%,complete       
  aaref:9470,Sobic.007G098500.1.p,igloc:Ig000002  
  chrmap:70a,15201l,14x,NC_024465.1:70639407-70669113:+   
  15723   208-15408       Sobic.007G098500.2.p,   100     auxin transport protein (BIG)
..
  where AAref is packed field of bitscore,referID,refqual,iglocID
  and Chromosome_map is packed field of align%,length,exons,chr_gene_span

consv_ohnologs.tab = table of ohnolog high identity paralogs on duplicated chromosomes (ref:pnas2011schnable)
mediatorp2.tab = table of Mediator of RNA polymerase II transcription subunit genes

Developed at the Genome Informatics Lab of Indiana University Biology Department