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Index of /EvidentialGene/evigene/scripts

      Name                             Last modified       Size  

[DIR] Parent Directory 17-Apr-2017 16:06 - [DIR] ests/ 06-Aug-2017 14:42 - [TXT] cdna_proteins.pm 28-Jul-2017 12:31 53k [DIR] genoasm/ 27-Jul-2017 11:00 - [DIR] genes/ 27-Jul-2017 10:59 - [TXT] genefindcds2.pl 26-Jul-2017 23:05 174k [TXT] genefindcds.pl 26-Jul-2017 23:05 174k [DIR] prot/ 23-Jul-2017 17:11 - [TXT] cdsgff2genbank.pl 15-Jul-2017 15:57 33k [TXT] genomefeatdens.pl 21-Jun-2017 20:03 15k [DIR] rnaseq/ 31-May-2017 23:35 - [TXT] overbestgene2.perl 15-May-2017 14:42 75k [TXT] blast92gff3.pl 08-Apr-2017 18:10 38k [TXT] altbest2.pl 04-Apr-2017 18:45 59k [TXT] overgenedup.pl 04-Apr-2017 14:37 50k [TXT] equalgene.pl 04-Apr-2017 14:37 50k [TXT] aug2mapgff.pl 27-Mar-2017 16:47 16k [TXT] cdna_evigenesub.pm 21-Mar-2017 12:50 41k [TXT] evgmrna2tsa2.pl 21-Mar-2017 12:42 134k [TXT] evgmrna2tsa.pl 21-Mar-2017 12:42 134k [TXT] overintron.pl 03-Mar-2017 12:57 21k [TXT] altbest.pl 20-Jul-2016 13:40 47k [TXT] splitMfasta.pl 09-Jul-2016 21:25 3k [TXT] makeblastscore3.pl 17-Feb-2016 21:02 31k [TXT] makeblastscore.pl 17-Feb-2016 21:02 31k [TXT] bestgenes_update.pl 08-Jan-2016 16:50 96k [TXT] eval_orthogroup_genesets.pl 14-Dec-2015 21:24 32k [TXT] blast2bestgenes.pl 11-Dec-2015 02:08 32k [TXT] cleanmakergff.pl 05-Dec-2015 16:52 12k [DIR] omcl/ 01-Nov-2015 14:06 - [TXT] overlapfilter15.pl 03-Aug-2015 20:18 28k [TXT] overlapfilter 03-Aug-2015 20:18 28k [TXT] agplift2gff.pl 28-May-2015 13:29 23k [TXT] cdna_bestorf.pl 26-May-2015 14:07 29k [TXT] namecleangb.pl 09-May-2015 16:01 7k [TXT] overlapfilter10.pl 02-May-2015 21:24 26k [TXT] overlapfilter.perl 02-May-2015 21:24 26k [TXT] bestgenes_update_1504.pl 29-Apr-2015 16:31 89k [TXT] genefindcds1.pl 25-Mar-2015 14:09 85k [TXT] makeblastscore2.pl 28-Feb-2015 14:14 20k [TXT] bestgenes_update_1502.pl 05-Feb-2015 13:48 77k [TXT] blast92orthomcl10.pl 25-Aug-2014 19:52 22k [TXT] gmap_to_gff.pl 16-Jun-2014 21:36 37k [TXT] gmap_to_btab.pl 16-Jun-2014 21:36 37k [TXT] overbestgene1.perl 28-May-2014 13:19 43k [TXT] evgalign2genomeloci_info.txt 27-Sep-2013 12:56 5k [   ] makealt.sh 22-Sep-2013 00:56 3k [TXT] annotate_predictions.pl 07-Sep-2013 21:05 33k [TXT] evaluate_predictions.pl 31-Aug-2013 18:25 56k [DIR] grid/ 29-Jul-2013 13:05 - [TXT] evgrna2genbanktsa.pl 21-Jun-2013 13:00 37k [TXT] evigene2genbanktbl.pl 27-Mar-2013 12:34 88k [TXT] eval_orthodb_groups.pl 10-Oct-2012 21:27 35k [TXT] pindel2gff.pl 03-Sep-2012 21:48 2k [TXT] genereplacex.pl 30-Aug-2012 16:19 17k [TXT] orthomclsum.pl 26-Aug-2012 14:49 9k [TXT] pasa2evigff.pl 19-Aug-2012 21:28 10k [TXT] exonrclust.pl 14-Aug-2012 15:37 6k [TXT] gff2ggb.pl 28-Jul-2012 13:53 3k [TXT] efetchests.pl 18-Jul-2012 20:34 4k [TXT] uniprotfetchbeta.pl 23-Jun-2012 14:14 22k [TXT] estsamcover.pl 17-Jun-2012 19:46 16k [   ] maketraa2.sh 09-Jun-2012 13:29 6k [TXT] estblastcover.pl 09-May-2012 16:09 15k [TXT] genestructab.pl 25-Mar-2012 17:02 24k [   ] cdhitprot.sh 18-Feb-2012 20:19 1k [TXT] snp2cds.pl 03-Jan-2012 23:00 13k [TXT] snpcds.pl 29-Dec-2011 12:24 8k [TXT] joincheck2.pl 16-Nov-2011 13:26 24k [TXT] gmapgff2btab.pl 05-Nov-2011 13:49 10k [TXT] asm21align.pl 27-Oct-2011 11:56 29k [TXT] uniprot-uniref.info 10-Oct-2011 21:46 2k [TXT] genomewigdens.pl 08-Oct-2011 14:34 2k [TXT] geneupdcompare.pl 07-Oct-2011 15:25 25k [   ] inmatescore.sh 28-Sep-2011 13:53 6k [TXT] recombine_partial_outputs.pl 17-Sep-2011 13:38 8k [TXT] partition_GFF_qnd.pl 17-Sep-2011 13:24 10k [TXT] gff2bed.pl 07-Sep-2011 23:35 1k [TXT] process_exonerate_gff3.perl 03-Sep-2011 17:52 20k [TXT] pa2dgg_gff3proteins.pl 31-Aug-2011 12:03 19k [TXT] gmapgffclean.pl 18-Aug-2011 22:02 1k [TXT] inmatescore.pl 16-Aug-2011 14:29 30k [TXT] intronscore.pl 16-Aug-2011 13:36 12k [TXT] evigene3compare.pl 07-Aug-2011 12:44 35k [TXT] overjoinspan.pl 23-Jul-2011 17:33 24k [TXT] overlapjoins.pl 23-Jul-2011 17:07 12k [TXT] exonregion.pl 22-Jun-2011 16:10 16k [TXT] geneuniq.pl 18-Jun-2011 18:05 8k [   ] exonerate-refine.sh 11-Jun-2011 16:53 1k [TXT] bestgenes_puban.pl 06-Jun-2011 13:50 33k [   ] bestnotrivial.sh 17-May-2011 11:57 4k [TXT] countblatalign.pl 14-May-2011 13:11 9k [TXT] evigff2gtf.pl 11-Apr-2011 16:53 1k [TXT] evigene_eval.conf 03-Apr-2011 13:21 4k [TXT] overtabulate.pl 23-Mar-2011 10:48 9k [   ] makegenescore.sh 22-Feb-2011 13:31 1k [TXT] fagff2sam.pl 27-Dec-2010 20:07 2k [TXT] mpile2tiletab.pl 30-Nov-2010 19:17 4k [   ] evalpred.sh 18-Oct-2010 16:23 3k [   ] anaugmap.sh 18-Oct-2010 15:17 3k [TXT] evaltab.pl 05-Oct-2010 12:31 5k [   ] makeseqfiles.sh 04-Oct-2010 21:21 1k [TXT] efetchncbi.pl 02-Oct-2010 13:56 4k [   ] exonr2gff3.sh 05-Sep-2010 14:27 1k [TXT] gff2hints.pl 12-Feb-2010 16:24 27k [TXT] blat2hints.pl 01-Nov-2009 07:57 30k [TXT] ncbi_mapview2gff.pl 17-Oct-2009 13:50 6k [TXT] overlapeval.pl 12-Sep-2009 21:14 22k [   ] rungeneconv.sh 26-Apr-2009 14:15 1k [TXT] partition_GFF_add.pl 02-Jul-2008 15:13 10k [TXT] gg_job.pl 26-Jun-2008 18:47 15k [TXT] partition_GFF_genome.pl 21-Jan-2008 20:03 14k [TXT] recombine_GFF_partial_outputs.pl 07-Jan-2008 18:55 3k [TXT] blat2gff.pl 21-Oct-2007 15:54 8k [TXT] Fasta_reader.pm 30-Mar-2007 11:29 3k


Developed at the Genome Informatics Lab of Indiana University Biology Department