euGenes/Arthropods About Arthropods EvidentialGene DroSpeGe

About euGenes/EvidentialGene

EvidentialGene is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu.

Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification.

How to cite this work, and who else has, is in /EvidentialGene/evigene/docs/evigene-cites.txt

All software developed for EvidentialGene is publicly available for use, http://eugenes.org/EvidentialGene/evigene/
The best way to get and update is: ftp ftp://arthropods.eugenes.org/evigene.tar
Archived older (and occasional newer prerelease) Evigene software is here: ftp://arthropods.eugenes.org/evigene_old/

      Name                                  Last modified       Size  

[DIR] Parent Directory 22-May-2017 22:11 - [TXT] EvidentialGene_quality.html 27-Nov-2014 20:57 16k [TXT] EvidentialGene_trassembly 08-Jun-2017 20:46 13k [TXT] EvidentialGene_trassembly_pipe.html 08-Jun-2017 20:46 13k [   ] Evigene-doc2012draft1.pdf 06-Mar-2012 01:26 75k [   ] EvigeneBeeTickWflea2014poster.pdf 11-Jun-2014 14:11 452k [DIR] EvigeneOrthocomplete2014/ 14-May-2015 13:57 - [   ] EvigeneRNA2013poster.pdf 12-Jun-2013 14:09 1.5M [   ] PerfectGenes2010.pdf 08-Jun-2010 09:01 1.1M [   ] PerfectGenes2012.pdf 29-May-2012 14:25 1.1M [   ] PerfectGenes2012poster.pdf 27-May-2012 21:39 1.9M [DIR] ProjectReports/ 22-Jul-2017 22:18 - [DIR] aaquals/ 27-Nov-2014 20:46 - [DIR] aareflong/ 10-Apr-2013 14:43 - [DIR] alntopbars/ 29-Apr-2013 15:25 - [   ] aphid-daph-genedups-poster-slim.pdf 09-Jun-2009 15:57 527k [   ] arperfgenes1206dm.pdf 21-May-2012 11:52 3.1M [   ] arperfgenes1206kc.pdf 29-May-2012 14:25 1.1M [TXT] arperfgenes1206kc.pptx 29-May-2012 14:26 910k [   ] bugs-find-newgenes-poster.pdf 07-Apr-2008 20:01 800k [   ] esangi0912-new-genome-informatics.pdf 16-Dec-2009 16:28 1.1M [IMG] evigeneGR16diagplr_bothb.png 20-Dec-2016 13:47 119k [   ] evigene_bothgalmod1606iu.pdf 05-Jul-2016 19:54 3.4M [TXT] evigene_bothgalmod1606iu.pptx 05-Jul-2016 19:53 2.3M [TXT] evigene_plantsanimals_2017.txt 29-Apr-2017 20:40 12k [TXT] evigene_plantsanimals_2017sum.html 24-May-2017 13:03 7k [TXT] evigene_plantsanimals_2017sum.txt 24-May-2017 12:51 6k [TXT] evigene_plantsanimals_news1705.txt 24-May-2017 14:49 4k [   ] evigenegalx1606iu.pdf 27-Jun-2016 10:59 2.2M [TXT] evigenegalx1606iu.pptx 27-Jun-2016 10:59 1.6M [   ] evigenegmod1606iu.pdf 30-Jun-2016 13:19 3.3M [TXT] evigenegmod1606iu.pptx 30-Jun-2016 13:19 2.1M [TXT] gene-ome-term.html 28-Jan-2017 13:47 4k [TXT] genes2-summary.txt 14-Jan-2011 14:18 4k [IMG] genes2annot-brief-diagram.jpg 14-Jan-2011 14:16 190k [   ] genes2annot-brief-diagram.pdf 14-Jan-2011 14:05 27k [IMG] genes2annot-brief-diagram.png 14-Jan-2011 14:26 103k [IMG] genes2annot-diagram2.jpg 21-Dec-2010 13:34 282k [   ] genes2annot-diagram2.pdf 21-Dec-2010 13:28 30k [DIR] lncrnagene/ 23-Apr-2016 15:45 -


Developed at the Genome Informatics Lab of Indiana University Biology Department